Dr Matthew Adams
Honorary Research Fellow
School of Chemical Engineering
+61 7 336 53687
Publications
Book Chapters
Ferguson, Angus J. P. , Scanes, Peter R. , Potts, Jaimie D. , Adams, Matthew P. and O'Brien, Katherine R. (2018). Seagrasses in the South-East Australian Region - Distribution, Metabolism, and Morphology in Response to Hydrodynamic, Substrate, and Water Quality Stressors. Seagrasses of Australia: Structure, Ecology and Conservation. (pp. 419-444) edited by Anthony W. D. Larkum, Gary A. Kendrick and Peter J. Ralph. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-71354-0_14
O'Brien, Katherine R., Adams, Matthew P., Ferguson, Angus J. P., Samper-Villarreal, Jimena, Maxwell, Paul S., Baird, Mark E. and Collier, Catherine (2018). Seagrass Resistance to Light Deprivation: Implications for Resilience. Seagrasses of Australia: Structure, Ecology and Conservation. (pp. 287-311) edited by Anthony W. D. Larkum, Gary A. Kendrick and Peter J. Ralph. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-71354-0_10
Journal Articles
Xie, Zunyi, Game, Edward T., Phinn, Stuart R., Adams, Matthew P., Bayarjargal, Yunden, Pannell, David J., Purevbaatar, Ganbold, Baldangombo, Batkhuyag, Hobbs, Richard J., Yao, Jing and McDonald-Madden, Eve (2024). A scalable big data approach for remotely tracking rangeland conditions. Communications Earth & Environment, 5 (1) 349. doi: 10.1038/s43247-024-01516-2
Wang, Xinyan, Adams, Matthew P. and Shao, Dongdong (2024). Trade‐Off Between Light Deprivation and Desiccation in Intertidal Seagrasses Due To Periodic Tidal Inundation and Exposure: Insights From a Data‐Calibrated Model. Journal of Geophysical Research: Biogeosciences, 129 (4) e2024JG008000. doi: 10.1029/2024jg008000
Holden, Matthew H., Plagányi, Eva E., Fulton, Elizabeth A., Campbell, Alexander B., Janes, Rachel, Lovett, Robyn A., Wickens, Montana, Adams, Matthew P., Botelho, Larissa Lubiana, Dichmont, Catherine M., Erm, Philip, Helmstedt, Kate J., Heneghan, Ryan F., Mendiolar, Manuela, Richardson, Anthony J., Rogers, Jacob G. D., Saunders, Kate and Timms, Liam (2024). Cost–benefit analysis of ecosystem modeling to support fisheries management. Journal of Fish Biology, 104 (6), 1667-1674. doi: 10.1111/jfb.15741
Vollert, Sarah A., Drovandi, Christopher and Adams, Matthew P. (2024). Unlocking ensemble ecosystem modelling for large and complex networks. PLoS Computational Biology, 20 (3) e1011976, e1011976. doi: 10.1371/journal.pcbi.1011976
Akinlotan, Morenikeji D., Warne, David J., Helmstedt, Kate J., Vollert, Sarah A., Chadès, Iadine, Heneghan, Ryan F., Xiao, Hui and Adams, Matthew P. (2024). Beyond expected values: making environmental decisions using value of information analysis when measurement outcome matters. Ecological Indicators, 160 111828, 1-12. doi: 10.1016/j.ecolind.2024.111828
Monsalve-Bravo, Gloria M., Dutta, Ravi C., Zuluaga-Bedoya, Christian C., Adams, Matthew P., Smart, Simon, Konarova, Muxina and Bhatia, Suresh K. (2024). Interpreting gas sorption isotherms in glassy polymers using a Bayesian framework: a view on parameter uncertainty propagation into mixture sorption predictions. Journal of Membrane Science, 689 122159, 1-19. doi: 10.1016/j.memsci.2023.122159
Botha, Imke, Adams, Matthew Philip P., Frazier, David, Tran, Dang Khuong, Bennett, Frederick R. and Drovandi, Christopher (2023). Component-wise iterative ensemble Kalman inversion for static Bayesian models with unknown measurement error covariance. Inverse Problems, 39 (12) 125014, 125014. doi: 10.1088/1361-6420/ad05df
Minguito-Frutos, Mario, Adams, Matthew P., Alcoverro, Teresa, Vilas, María P., Alonso, David, Mayol, Elvira, Bernardeu-Esteller, Jaime, Marín-Guirao, Lázaro, Ruiz, Juan M. and Boada, Jordi (2023). Quantifying the role of photoacclimation and self-facilitation for seagrass resilience to light deprivation. Frontiers in Plant Science, 14 1186538, 1-13. doi: 10.3389/fpls.2023.1186538
Minguito-Frutos, Mario, Boada, Jordi, Pagès, Jordi F., Marco-Méndez, Candela, Arthur, Rohan, Adams, Matthew P. and Alcoverro, Teresa (2023). Species-specific acclimatization capacity of key traits explains global vertical distribution of seagrass species. Global Ecology and Biogeography, 32 (6), 976-986. doi: 10.1111/geb.13673
Vilas, Maria P., Egger, Felix, Adams, Matthew P., Maier, Holger R., Robson, Barbara, Mestres, Jonathan Ferrer, Stewart, Lachlan, Maxwell, Paul and O'Brien, Katherine R. (2023). TALKS: a systematic framework for resolving model-data discrepancies. Environmental Modelling and Software, 163 105668, 1-9. doi: 10.1016/j.envsoft.2023.105668
Vollert, Sarah A., Drovandi, Christopher, Monsalve-Bravo, Gloria M. and Adams, Matthew P. (2023). Strategic model reduction by analysing model sloppiness: A case study in coral calcification. Environmental Modelling & Software, 159 105578, 1-13. doi: 10.1016/j.envsoft.2022.105578
Infantes, Eduardo, Hoeks, Selwyn, Adams, Matthew P., van der Heide, Tjisse, van Katwijk, Marieke M. and Bouma, Tjeerd J. (2022). Seagrass roots strongly reduce cliff erosion rates in sandy sediments. Marine Ecology Progress Series, 700, 1-12. doi: 10.3354/meps14196
Monsalve-Bravo, Gloria M., Lawson, Brodie A. J., Drovandi, Christopher, Burrage, Kevin, Brown, Kevin S, Baker, Christopher M., Vollert, Sarah A., Mengersen, Kerrie, McDonald-Madden, Eve and Adams, Matthew P. (2022). Analysis of sloppiness in model simulations: unveiling parameter uncertainty when mathematical models are fitted to data. Science Advances, 8 (38) eabm5952, 1-19. doi: 10.1126/sciadv.abm5952
Adams, Matthew P. (2022). Integral, mean and covariance of the simplex-truncated multivariate normal distribution. PloS One, 17 (7) e0272014, 1-31. doi: 10.1371/journal.pone.0272014
Macreadie, Peter I., Robertson, Alistar I., Spinks, Bernadette, Adams, Matthew P., Atchison, Jennifer M., Bell-James, Justine, Bryan, Brett A., Chu, Long, Filbee-Dexter, Karen, Drake, Lauren, Duarte, Carlos M., Friess, Daniel A., Gonzalez, Felipe, Grafton, R. Quentin, Helmstedt, Kate J., Kaebernick, Melanie, Kelleway, Jeffrey, Kendrick, Gary A., Kennedy, Hilary, Lovelock, Catherine E., Megonigal, J. Patrick, Maher, Damien T., Pidgeon, Emily, Rogers, Abbie A., Sturgiss, Rob, Trevathan-Tackett, Stacey M., Wartman, Melissa, Wilson, Kerrie A. and Rogers, Kerrylee (2022). Operationalizing marketable blue carbon. One Earth, 5 (5), 485-492. doi: 10.1016/j.oneear.2022.04.005
Plein, Michaela, O'Brien, Katherine R., Holden, Matthew H., Adams, Matthew P., Baker, Christopher M., Bean, Nigel G., Sisson, Scott A., Bode, Michael, Mengersen, Kerrie L. and McDonald‐Madden, Eve (2022). Modeling total predation to avoid perverse outcomes from cat control in a data‐poor island ecosystem. Conservation Biology, 36 (5) e13916. doi: 10.1111/cobi.13916
Shao, Dongdong , Liu, Kang , Mossman, Hannah L. , Adams, Matthew P. , Wang, Hongfang , Li, Dongxue , Yan, Yu and Cui, Baoshan (2021). A prioritization metric and modelling framework for fragmented saltmarsh patches restoration. Ecological Indicators, 128 107833, 107833. doi: 10.1016/j.ecolind.2021.107833
Lambert, Victoria, Bainbridge, Zoe T., Collier, Catherine, Lewis, Stephen E., Adams, Matthew P., Carter, Alex, Saunders, Megan I., Brodie, Jon, Turner, Ryan D.R., Rasheed, Michael A. and O'Brien, Katherine R. (2021). Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence. Marine Pollution Bulletin, 169 112494, 1-12. doi: 10.1016/j.marpolbul.2021.112494
Baird, Mark E., Wild-Allen, Karen A., Parslow, John, Mongin, Mathieu, Robson, Barbara, Skerratt, Jennifer, Rizwi, Farhan, Soja-Woźniak, Monika, Jones, Emlyn, Herzfeld, Mike, Margvelashvili, Nugzar, Andrewartha, John, Langlais, Clothilde, Adams, Matthew P., Cherukuru, Nagur, Gustafsson, Malin, Hadley, Scott, Ralph, Peter J., Rosebrock, Uwe, Schroeder, Thomas, Laiolo, Leonardo, Harrison, Daniel and Steven, Andrew D. L. (2020). CSIRO Environmental Modelling Suite (EMS): scientific description of the optical and biogeochemical models (vB3p0). Geoscientific Model Development, 13 (9), 4503-4553. doi: 10.5194/gmd-13-4503-2020
Collier, C. J., Carter, A. B., Rasheed, M., McKenzie, L., Udy, J., Coles, R., Brodie, J., Waycott, M., O’Brien, K. R., Saunders, M., Adams, M., Martin, K., Honchin, C., Petus, C. and Lawrence, E. (2020). An evidence-based approach for setting desired state in a complex Great Barrier Reef seagrass ecosystem: a case study from Cleveland Bay. Environmental and Sustainability Indicators, 7 100042, 100042. doi: 10.1016/j.indic.2020.100042
Zhang, Xiaomei, Zhou, Yi, Adams, Matthew P., Wang, Feng, Xu, Shaochun, Wang, Pengmei, Liu, Peng, Liu, Xujia and Yue, Shidong (2020). Plant morphology and seed germination responses of eelgrass (Zostera japonica) to water depth and light availability in Ailian Bay, northern China. Marine Environmental Research, 162 105082, 105082. doi: 10.1016/j.marenvres.2020.105082
Xiao, Man, Hamilton, David P., O’Brien, Katherine R., Adams, Matthew P., Willis, Anusuya and Burford, Michele A. (2020). Are laboratory growth rate experiments relevant to explaining bloom-forming cyanobacteria distributions at global scale?. Harmful Algae, 92 101732, 101732. doi: 10.1016/j.hal.2019.101732
Adams, Matthew P., Sisson, Scott A., Helmstedt, Kate J., Baker, Christopher M., Michaela Plein, Holden, Matthew H., Holloway, Jacinta, Mengersen, Kerrie L. and McDonald-Madden, Eve (2020). Informing management decisions for ecological networks, using dynamic models calibrated to noisy time-series data. Ecology Letters, 23 (4) ele.13465, 607-619. doi: 10.1111/ele.13465
Adams, Matthew P., Koh, Edwin J. Y., Vilas, Maria P., Collier, Catherine J., Lambert, Victoria M., Sisson, Scott A., Quiroz, Matias, McDonald-Madden, Eve, McKenzie, Len J. and O'Brien, Katherine R. (2020). Predicting seagrass decline due to cumulative stressors. Environmental Modelling and Software, 130 104717, 104717. doi: 10.1016/j.envsoft.2020.104717
Samson, Julia E., Ghisalberti, Marco, Adams, Matthew P., Reidenbach, Matthew A., Long, Matthew H., Shavit, Uri and Pasour, Virginia B. (2019). Editorial: Canopies in aquatic ecosystems: integrating form, function, and biophysical processes. Frontiers in Marine Science, 6 697, 697. doi: 10.3389/fmars.2019.00697
Vilas, Maria P., Adams, Matthew P., Ball, Marilyn C., Meynecke, Jan-Olaf, Santini, Nadia S., Swales, Andrew and Lovelock, Catherine E. (2019). Night and day: Shrinking and swelling of stems of diverse mangrove species growing along environmental gradients. PLoS One, 14 (9) e0221950, e0221950. doi: 10.1371/journal.pone.0221950
Baird, Mark E., Wild-Allen, Karen A., Parslow, John, Mongin, Mathieu, Robson, Barbara, Skerratt, Jennifer, Rizwi, Farhan, Soja-Woznaik, Monika, Jones, Emlyn, Herzfeld, Mike, Margvelashvili, Nugzar, Andrewartha, John, Langlais, Clothilde, Adams, Matthew P., Cherukuru, Nagur, Gustafsson, Malin, Hadley, Scott, Ralph, Peter J., Rosebrock, Uwe, Schroeder, Thomas, Laiolo, Leonardo, Harrison, Daniel and Steven, Andrew D. L. (2019). CSIRO Environmental Modelling Suite (EMS): Scientific description of the optical and biogeochemical models (vB3p0). Geoscientific Model Development Discussions, 1-107. doi: 10.5194/gmd-2019-115
Lin, Haiying, Sun, Tao, Adams, Matthew P., Zhou, Yi, Zhang, Xiaomei, Xu, Shaochun and Gu, Ruiting (2018). Seasonal dynamics of trace elements in sediment and seagrass tissues in the largest Zostera japonica habitat, the Yellow River Estuary, northern China. Marine Pollution Bulletin, 134, 5-13. doi: 10.1016/j.marpolbul.2018.02.043
O'Brien, Katherine R., Waycott, Michelle, Maxwell, Paul, Kendrick, Gary A., Udy, James W., Ferguson, Angus J. P., Kilminster, Kieryn, Scanes, Peter, McKenzie, Len J., McMahon, Kathryn, Adams, Matthew P., Samper-Villarreal, Jimena, Collier, Catherine, Lyons, Mitchell, Mumby, Peter J., Radke, Lynda, Christianen, Marjolijn J. A. and Dennison, William C. (2018). Seagrass ecosystem trajectory depends on the relative timescales of resistance, recovery and disturbance. Marine Pollution Bulletin, 134, 166-176. doi: 10.1016/j.marpolbul.2017.09.006
Collier, Catherine J., Langlois, Lucas, Ow, Yan, Johansson, Charlotte, Giammusso, Manuela, Adams, Matthew P., O'Brien, Katherine R. and Uthicke, Sven (2018). Losing a winner: thermal stress and local pressures outweigh the positive effects of ocean acidification for tropical seagrasses. New Phytologist, 219 (3), 1005-1017. doi: 10.1111/nph.15234
Adams, Matthew P., Ghisalberti, Marco, Lowe, Ryan J., Callaghan, David P., Baird, Mark E., Infantes, Eduardo and O'Brien, Katherine R. (2018). Water residence time controls the feedback between seagrass, sediment and light: implications for restoration. Advances in Water Resources, 117, 14-26. doi: 10.1016/j.advwatres.2018.04.004
Vilas, Maria P., Marti, Clelia L., Adams, Matthew P., Oldham, Carolyn E. and Hipsey, Matthew R. (2017). Invasive macrophytes control the spatial and temporal patterns of temperature and dissolved oxygen in a shallow lake: a proposed feedback mechanism of macrophyte loss. Frontiers in Plant Science, 8 2097, 2097. doi: 10.3389/fpls.2017.02097
Vilas, Maria P., Adams, Matthew P., Oldham, Carolyn E, Marti, Clelia L. and Hipsey, Matthew R. (2017). Fragment dispersal and plant-induced dieback explain irregular ring-shaped pattern formation in a clonal submerged macrophyte. Ecological Modelling, 363, 111-121. doi: 10.1016/j.ecolmodel.2017.09.001
Xiao, Man, Adams, Matthew P., Willis, Anusuya, Burford, Michele A. and O'Brien, Katherine R. (2017). Variation within and between cyanobacterial species and strains affects competition: implications for phytoplankton modelling. Harmful Algae, 69, 38-47. doi: 10.1016/j.hal.2017.10.001
Collier,Catherine J. , Ow, Yan X. , Langlois, Lucas , Uthicke, Sven , Johansson, Charlotte L. , O'Brien, Katherine R. , Hrebien, Victoria and Adams, Matthew P. (2017). Optimum temperatures for net primary productivity of three tropical seagrass species. Frontiers in Plant Science, 8 1446. doi: 10.3389/fpls.2017.01446
Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas and O'Brien, Katherine R. (2017). Model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species. Scientific Reports, 7 (1) 39930, 1-12. doi: 10.1038/srep39930
Adams, Matthew P., Hovey, Renae K., Hipsey, Matthew R., Bruce, Louise C., Ghisalberti, Marco, Lowe, Ryan J., Gruber, Renee K., Ruiz-Montoya, Leonardo, Maxwell, Paul S., Callaghan, David P., Kendrick, Gary A. and O'Brien, Katherine R. (2016). Feedback between sediment and light for seagrass: where is it important?. Limnology and Oceanography, 61 (6), 1937-1955. doi: 10.1002/lno.10319
Collier, C. J., Adams, M. P., Langlois, L., Waycott, M., O'Brien, K. R., Maxwell, P. S. and McKenzie, L. (2016). Thresholds for morphological response to light reduction for four tropical seagrass species. Ecological Indicators, 67, 358-366. doi: 10.1016/j.ecolind.2016.02.050
Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O'Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C. and Rasheed, Michael A. (2016). A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325, 13-27. doi: 10.1016/j.ecolmodel.2015.12.011
Adams, Matthew P. (2016). Mathematical models of calcium and tight junctions in normal and reconstructed epidermis. Bulletin of the Australian Mathematical Society, 93 (2), 347-349. doi: 10.1017/S0004972715001537
Adams, Matthew P., Ferguson, Angus J. P., Maxwell, Paul S., Lawson, Brodie A. J., Samper-Villarreal, Jimena and O'Brien, Katherine R. (2016). Light history-dependent respiration explains the hysteresis in the daily ecosystem metabolism of seagrass. Hydrobiologia, 766 (1), 75-88. doi: 10.1007/s10750-015-2444-5
Adams, Matthew P., Saunders, Megan I., Maxwell, Paul S., Tuazon, Daniel, Roelfsema, Chris M., Callaghan, David P., Leon, Javier, Grinham, Alistair R. and O'Brien, Katherine R. (2016). Prioritizing localized management actions for seagrass conservation and restoration using a species distribution model. Aquatic Conservation: Marine and Freshwater Ecosystems, 26 (4), 639-659. doi: 10.1002/aqc.2573
Willis, Anusuya, Adams, Matthew P., Chuang, Ann W., Orr, Philip T., O'Brien, Katherine R. and Burford, Michele A. (2015). Constitutive toxin production under various nitrogen and phosphorus regimes of three ecotypes of Cylindrospermopsis raciborskii ((Wołoszyńska) Seenayya et Subba Raju). Harmful Algae, 47, 27-34. doi: 10.1016/j.hal.2015.05.011
Adams, Matthew P., Mallet, Daniel G. and Pettet, Graeme J. (2015). Towards a quantitative theory of epidermal calcium profile formation in unwounded skin. PLoS One, 10 (1) e0116751, e0116751.1-e0116751.23. doi: 10.1371/journal.pone.0116751
Jaatinen, Esa A., Adams, Matthew P., Chou, Alison, Parry, Nick McKay and Fredericks, Peter M. (2014). An acoustically enhanced gold film Raman sensor on a lithium niobate substrate. Journal Of Raman Spectroscopy, 45 (8), 636-641. doi: 10.1002/jrs.4522
Adams, M. P., Mallet, D. G. and Pettet, G. J. (2012). Active regulation of the epidermal calcium profile. Journal of Theoretical Biology, 301, 112-121. doi: 10.1016/j.jtbi.2012.02.017
Conference Papers
Bennett, F. R., Botha, I., Adams, M. P. and Drovandi, C. (2023). Assimilating modelled dissolved inorganic nitrogen loads to monitored data using component-wise iterative ensemble Kalman inversion. 25th International Congress on Modelling and Simulation, Darwin, NT Australia, 9-14 July 2023. Sydney, NSW Australia: Modelling and Simulation Society of Australia and New Zealand. doi: 10.36334/modsim.2023.bennett42
Vilas, Maria P., Bennett, Frederick R., Verburg, Kirsten and Adams, Matthew P. (2021). Considering unknown uncertainty in imperfect models: nitrogen mineralization as a case study. 24th International Congress on Modelling and Simulation, Sydney, Australia, 5-10 December 2021. Sydney, NSW Australia: The Modelling and Simulation Society of Australia and New Zealand.
Lambert, V., Adams, M. P., Collier, C., Carter, A., Saunders, M., Brodie, J., Bainbridge, Z., Rasheed, M., Turner, R. and O'Brien, K. R. (2019). Towards ecologically relevant targets: Impact of flow and sediment discharge on seagrass communities in the great barrier reef. 23rd International Congress on Modelling and Simulation - Supporting Evidence-Based Decision Making: The Role of Modelling and Simulation, MODSIM 2019, Canberra, ACT, Australia, 1 - 6 December 2019. Modelling and Simulation Society of Australia and New Zealand Inc. (MSSANZ). doi: 10.36334/modsim.2019.G1.lambert
Adams, M. P., Ferguson, A. J. P., Collier, C. J., Baird, M. E., Gruber, R. K. and O'Brien, K. R. (2015). Assessment of light history indicators for predicting seagrass biomass. International Congress on Modelling and Simulation, Gold Coast, QLD, Australia, 29 November - 4 December 2015. CHRISTCHURCH: The Modelling and Simulation Society of Australia and New Zealand (MSSANZ).
Carroll, Joshua, Chou, Alison, Cletus, Biju, Olds, William, Adams, Matthew, Izake, Emad, Fredericks, Peter and Jaatinen, Esa (2014). Enhancing Raman signal sufficiently for practical sensing applications. Optics and Photonics for Energy and the Environment (E2), Canberra, ACT, Australia, 2-5 December 2014. Washington, D.C.: Optics InfoBase. doi: 10.1364/E2.2014.EW5A.5
Adams, Matthew P., Maxwell, Paul, Samper-Villarreal, Jimena, Ferguson. Angus and O’Brien, Kate (2013). Predicting the impact of light deprivation on seagrass production and viability. AMSA 2013: Australian Marine Science Golden Jubilee Conference, Gold Coast, Australia, 7-11 July 2013. Kilkivan, QLD, Australia: Publisher.
Adams, Matthew Philip, Mallet, Dann G. and Pettet, G. J. (2012). A continuum model of the growth of engineered epidermal skin substitutes. 10th Biennial Engineering Mathematics and Applications Conference (EMAC2011) , Sydney NSW Australia, December 2011. Adelaide, SA Australia: Australian Mathematical Publishing Association. doi: 10.21914/anziamj.v53i0.5075
Adams, Matthew P., Mallet, Daniel G. and Pettet, Graeme J. (2012). Solution methods for advection-diffusion-reaction equations on growing domains and subdomains, with application to modelling skin substitutes. 4th International Conference on Computational Methods (ICCM2012), Gold Coast, Australia, 25-28 November 2012. Brisbane, Australia: Queensland University of Technolog.
Adams, Matthew Philip, Mallet, Dann G. and Pettet, G. J. (2011). A continuum model of the growth of engineered epidermal skin substitutes. 10th Biennial Engineering Mathematics and Applications Conference (EMAC2011), Sydney, Australia, 4-7 December 2011. Cambridge, United Kingdom: Cambridge University Press. doi: 10.0000/anziamj.v53i0.5075
Data Collection
Adams, Matthew (2018). Ecological Response Model for Lake Macquarie Effects Based Assessment. The University of Queensland. (Dataset) doi: 10.48610/cf93936
Thesis
Adams, Matthew (2015). Mathematical models of calcium and tight junctions in normal and reconstructed epidermis. PhD Thesis, Queensland University of Technology, Queensland University of Technology.
Creative Works
O'Brien, Katherine R., Vilas, Maria P., Egger, Felix, Langsdorf, Hayley, Weber, Tony, Turner, Ryan, McCloskey, Gillian, Di Bella, Lawrence, Baird, Mark, Burford, Michele, Dean, Angela, Hamilton, David, Maier, Holger, Maxwell, Paul, O'Neill, Andrew, Shaw, Melanie and Adams, Matthew (2024). A guide to building informed trust in environmental models. Brisbane, QLD, Australia: The University of Queensland, School of Chemical Engineering. doi: 10.6084/m9.figshare.26925841.v1
O'Brien, Katherine R., Vilas, Maria P., Adams, Matthew P., Egger, Felix, Maxwell, Paul S., O'Neill, Andrew and Langsdorf, Hayley (2022). “The marriage of models and data”: a light-hearted animation with a serious purpose. figshare: Thoughts Drawn Out.
Research Reports
Desbiens, Amelia, Roff, George, Razak, Tries B., Wolfe, Kennedy, Emslie, Michael J., Hoey, Andrew, Kennedy, Emma V., Thompson, Angus, Adams, Matthew P., Baird, Mark, Chaloupka, Milani, Diaz-Pulido, Guillermo, Mongin, Mathieu and Mumby, Peter J. (2021). Integrative carbonate budget model of the Great Barrier Reef. Cairns, QLD Australia: Reef and Rainforest Research Centre.
Mason, Robert A. B. , de la Motte, Kimberley, Bozec, Yves-Marie, Adams, Matthew and Mumby, Peter J. (2020). Resilience-based management tools for the Great Barrier Reef: report to the National Environmental Science Program. Cairns, Qld, Australia: Reef and Rainforest Research Centre.
Lambert, Victoria M., Collier, Catherine, Brodie, Jon, Adams, Matthew P., Baird, Mark, Bainbridge, Zoe, Carter, Alex, Lewis, Stephen, Rasheed, Michael, Saunders, Megan and O'Brien, Kate (2020). Connecting sediment load targets to ecological outcomes for seagrass: report to the National Environmental Science Program. Cairns, Qld, Australia: Reef and Rainforest Research Centre.
Baird, Mark E., Adams, Matthew P., Andrewartha, John, Cherukuru, Nagur, Gustafsson, Malin, Hadley, Scott, Herzfeld, Mike, Jones, Emlyn, Margvelashvili, Nugzar, Mongin, Mathieu, Parlsow, John, Ralph, Peter J., Rizwi, Farhan, Robson, Barbara, Rosebrock, Uwe, Sakov, Pavel, Schroeder, Thomas, Skerratt, Jenny, Steven, Andrew D. L. and Wild-Allen, Karen A. (2017). CSIRO environmental modelling suite: scientific description of the optical, carbon chemistry and biogeochemical models (BGC1p0).
Babcock, R. C., Baird, M. E., Pillans, R., Patterson, T., Clementson, L. A., Haywood, M. E., Rochester, W., Morello, E., Kelly, N., Oubelkheir, K., Fry, G., Dunbabin, M., Perkins, S., Forcey, K., Cooper, S., Adams, M., O'Brien, K., Donovan, A., Kenyon, R., Carlin, G., Wild-Allen, K. and Limpus, C. (2015). An integrated study of the Gladstone marine system. CSIRO Oceans and Atmosphere
Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Teixeira da Silva, Eduardo, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John and Waycott, Michelle (2014). Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management: a summary of findings from Project 5.3 Vulnerability of seagrass habitats in the GBR to flood plume impacts: light, nutrients and salinity.